Basic Information
VIS ID
TVIS42000011
Fusion event
EBV-OSMR-AS1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
98103
Orient
+
Integrated sequence
AGACTCTTTACGGTTCATTCTCAGTGGAAGACCTGTTTGGTGCCAACTTAAACAGATACGCATGGCATCGCGGGGGCTAGACCTCTGGCTGGATGAGCAC| |GTGTGGAAGAGGAAACAGGAGATTGGTGTGAAAGGAGAAAATCTGCTTCTCCCCGACTTATGGCTAGATTTCCTACAACTCAGCCCCATCTTCCAGCGCA
Host Sequence
Chromosome
chr5
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
38749733/38749631 (Hg38)
End
38749733/38749631 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA5A
Target gene
OSMR-AS1
Nearest miRNA
hsa-mir-10397/Upstream/192070; hsa-mir-103a-1/Downstream/15201873;
Nearest TSS
ENST00000502646/Upstream/29358; ENST00000514586/Downstream/33949;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/192170, chr5-CpG: 92/Downstream/95769
Upstream sequence
tttcactctctccctagttctgccttttccacaatgtcccatagttggaatgcagtatgcagcttttttgattggctattttttacttagtaatattcat
Downstream sequence
CACACCTCCAAAAATTTCACAAAATCATGGCATACAAAGACCTCTCTCCCTGCAATCTTTGCTCAGGTAAATGAAATATTGTGGGGCTGGCCTTGTAGCT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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