Basic Information
VIS ID
TVIS42000013
Fusion event
EBV-LOC105378626 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
135493
Orient
+
Integrated sequence
CACCTTGCGTGCCAACACACGATTCGTGCGGTTTCCAGTATTTATCACGGCTTCCCGCCACAGGTAAAAGTTAACACTTAGGGTCAGCAGCTTGGTCAGG| |GATAGGTGCAAAAACCTGAGCTCGTCCTCGCGCAGAGCGCAAAGCGGCCAGTTCTTTAGCATCTTCAGGAGGAGCCCGTGAATCCCAGGTGTCATTCGCG
Host Sequence
Chromosome
chr1
Cytoband
p35.2
Reference genome
GRCh37/hg19
Start
32039478/31573877 (Hg38)
End
32039478/31573877 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105378626
Nearest miRNA
hsa-mir-12136/Upstream/834645; hsa-mir-101-1/Downstream/184783;
Nearest TSS
ENST00000473358/Upstream/160064; ENST00000466998/Downstream/1696;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/159714, chr1-CpG: 37/Downstream/12993
Upstream sequence
gctgcattagctgctaccaagaaagtcagtctgtcctttgaagctttgaagccaggcattgacctctctctagctataaaagccctaggtggcatcttct
Downstream sequence
cggcggcggcgCCCTcgcgcggcccgggggcggcggcgtcgggcgggccggggtcgcccgcgtcgcccagcgccaggcccaggccggcggccgccgACTG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate