Basic Information
VIS ID
TVIS42000014
Fusion event
EBV-chr1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
4912
Orient
+
Integrated sequence
CCCACGCCGGTTGGTGACAGAGCCTGACCCACGATGTCAGGTGGCCGTGCTATGCGCCCCGGGCACCAGGGGCCATGAAAGCCTCCTGGCGGCCTTCACG| |AATGCCGGATGCCTGTGCCGACGGGTGTTCTTTCGCGAGGTTAGGGACAACACGTTCCTCGACAAGTACGTGGGTCTGGCCATCGGAGGAGTTCATGGGG
Host Sequence
Chromosome
chr1
Cytoband
p35.2
Reference genome
GRCh37/hg19
Start
32333119/31867518 (Hg38)
End
32333119/31867518 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12136/Upstream/108783; hsa-mir-101-1/Downstream/219431;
Nearest TSS
ENST00000473358/Upstream/11950; ENST00000447478/Downstream/43762;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/78111, chr1-CpG: 82/Downstream/70163
Upstream sequence
gggagtttgaagatgcagtgagccaagatcataccactgcactccaacctgggtgacaaagcgagattctgtctcaaaaaaaaacaaaaacaaacaaaca
Downstream sequence
CTGGCCCCTACCCGTGACTTCACGTGCCCTGCAGAGATTCAGCCATGGGTGTGAGCCACAGAGGAGGCCAATACGGAGGCTCGGAGGGAGACGCAGCCCT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate