Basic Information
VIS ID
TVIS42000015
Fusion event
EBV-chr1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
106594
Orient
-
Integrated sequence
TGCGCCTGAGCTCCCGCTCCCATCGCAAAAAGTTGAGTTCGGTAGTCGAGGGCGCGTTGACCACGGGGGGCTCCAGGGAGCCTCCAAGCGGCGGCTGGCA| |GGCCTGCACCACGATCAGAGTCTCAACGTCCTCCCTTTTGATGGGCACGATGCCCACGACCCAAATCGCCCACCACCGCCCTGCGGTCTGGGTAACATTA
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
GRCh37/hg19
Start
39196838/38731166 (Hg38)
End
39196838/38731166 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12136/Upstream/641837; hsa-mir-101-1/Downstream/2023189;
Nearest TSS
ENST00000473358/Upstream/255970; ENST00000456813/Downstream/43342;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/21898, chr1-CpG: 72/Downstream/72891
Nearby gene
LOC105378660(-2525) ;
Upstream sequence
TTGTTTTTAAAATTTTTTTTGTCTTGATCCTTCAGGTCTTTGCCTTTTGATTTCTAAAACACGTTTTTTCTCCTAAGGAAAAAAAAAATCTCGAGAAAGA
Downstream sequence
GCAGAGCAGCTCATTCATGGAAGAAAAGAGGGAGTATTTCTTCTCTAAGTAATCATGAATTTTGGCGAAAGGAAATTCATGGGCGCATCAAAGAGTGAGT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate