Basic Information
VIS ID
TVIS42000016
Fusion event
EBV-chr1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
107782
Orient
-
Integrated sequence
GCCTCCATCATCCTGATCCTGCCCTTGGTCAGGTACGAGGCCGTCTTTGTCTCCGCCAAGCTGCACACCACTGTGGCCATCAATGTGGCCATCATACCTA| |TCCTGTGCTCGGTGGCCATGCTCATCAGGATATGCCGGATTTTCAAAAGCATGCGCCAGGGCACTGACTATGTCCCTGTCTCGGAGACGGTGGAACTGGA
Host Sequence
Chromosome
chr1
Cytoband
p34.2
Reference genome
GRCh37/hg19
Start
41395493/40929821 (Hg38)
End
41395493/40929821 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12136/Upstream/172449; hsa-mir-101-1/Downstream/2241831;
Nearest TSS
ENST00000473358/Upstream/65907; ENST00000475060/Downstream/49514;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/45200, chr1-CpG: 132/Downstream/49377
Nearby gene
LOC100128362(+8281) ;
Upstream sequence
CAGTGGTGCATCTTACCTGAAGAGCAGAGAAGTGCAGGCAGATGTAGGTGAAGCACAGGAGCAGCCCCAGTCCCTGAATTACAGAGGCCACCAGCAATAG
Downstream sequence
AGTACTGTGTCTTATATGGAAGAACCCAGTCAGCGTGATGATATCTCTCGCCTTACAGTTCAGATGGAAAACACCTATCAGTTGGGTGTGTTCTTTTATC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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