Basic Information
VIS ID
TVIS42000017
Fusion event
EBV-AGBL4 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
129449
Orient
-
Integrated sequence
TAGCCCCCGCAAAACCTCCCCAATCTCTAGGGCCGAGCACAGGGCGGTGGACAGCAGTTGGTATAGGGCAAGGTTGGGCCCCTGGGTAGTCACGTTCAGC| |CGCAACTCGCGTAGCACCACGTGGCTGCCGATAAACAGGGTCTCTCTCATCACGGTATGCAGGGGCTGGAAAAGGGGGTGGCGGTTGTAGGCCGAGAGAA
Host Sequence
Chromosome
chr1
Cytoband
p33
Reference genome
GRCh37/hg19
Start
49986183/49520511 (Hg38)
End
49986183/49520511 (Hg38)
Orient
+
Location type
Intronic
Target gene
AGBL4
Nearest miRNA
hsa-mir-12136/Upstream/4974959; hsa-mir-101-1/Downstream/1539326;
Nearest TSS
ENST00000473358/Upstream/263100; ENST00000494555/Downstream/331007;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/621270, chr1-CpG: 34/Downstream/503234
Upstream sequence
TGCCCTACCTCCACTCTGCCCTACCACTGCCACTGCTGAAAAGAAGGAAGGAAAGGAGAGACAGAAGGGCGTTTAACCACACTTTACGATTGCTGTGGGG
Downstream sequence
ttgaacttaaaggcacaagctgcattagctgctaccaagaaagtcagtctgtcctttgaagctttgaagccaggcattgacctctctctagctataaaag
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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