VISDB Viral Integration Site DataBase

VIS ID

TVIS42000018

Fusion event

EBV-C1orf87 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

47575

Orient

-

Integrated sequence

GAACACGTGCCCCCCGAGACCCGGGAGACGGTGGTGGGGGGAGCATGGCGTTATTCTTGGCGCGCCACACCTTATCTGGCACGGGTGCTGGCTGTCACGG| |CCGTGGCCCTGCTCCTGATGTTTCTGAGGTGGACCTGACGTTGCAGGCCCTTGGGGAGCGGGGGTTCTCCAGGCTCCTGGATCTGGGGCTGGCCTGCCTG

Chromosome

chr1

Cytoband

p32.1

Reference genome

Start

End

60522927/60057255 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-6719-3p ; hsa-mir-4526 ; hsa-mir-3660 ; hsa-mir-6730-3p ; hsa-mir-301b-5p ; hsa-mir-301a-5p ; hsa-mir-1234-3p ; hsa-mir-7107-5p ; hsa-mir-6777-3p ; hsa-mir-22-3p ; hsa-mir-4714-5p

Nearest miRNA

hsa-mir-12136/Upstream/323959; hsa-mir-101-1/Downstream/1788820;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/130344, chr1-CpG: 23/Downstream/16388

Upstream sequence

ttactgtatgccaggcactgttctaaagcctttggctggactaactcatggaatcctcacaatgaccctaagagataagtgctattatctttttttttct

Downstream sequence

gaaataagactgtttcatctacatggaaaatctgttgcttattgtagccccttcatcaatgatcttagcttatccgatgatcttagatcttctgggtaac