Basic Information
VIS ID
TVIS42000019
Fusion event
EBV-chr1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
36168
Orient
+
Integrated sequence
CACCTGTATCCCTTTCCCTCCACCCGCAGTAACCCAGCACTGGCGTGTGACGTGGTGTAAAGTTTTGCCTGAACCTGTGGTTGGGCAGGTACATGCCAAC| |AACCTTCTAAGCACCCGCGCTTGTGTTTTGCTTTATCTGCCGCCATCATGCCTACATTCTATCTTGCGTTACATGGGGGACAAACATATCATCTAATTGT
Host Sequence
Chromosome
chr1
Cytoband
p32.1
Reference genome
GRCh37/hg19
Start
60700671/60234999 (Hg38)
End
60700671/60234999 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1B
Target gene
LINC02778 ; LOC105378761
Nearest miRNA
hsa-mir-12136/Upstream/501703; hsa-mir-101-1/Downstream/1611076;
Nearest TSS
ENST00000473358/Upstream/120124; ENST00000496712/Downstream/361207;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/161131, chr1-CpG: 86/Downstream/807971
Upstream sequence
GCATTATAAAACTCCCGCTCTTCTTCCTGAGCCTGCAGGTTCTGAGTGTCTCGATCCCGTCCCTGACCCTGCCCACTCCCAGGCCTCTCGTTAGACGTTC
Downstream sequence
aaaaatctacttagttatagtcacaacttgactaattgttggcccaaaaggcctagctttcagcctatctcggcttttgacatgccttcctcaccacact
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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