Basic Information
VIS ID
TVIS42000020
Fusion event
EBV-chr1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
51348
Orient
+
Integrated sequence
GCCAATCCCGGGGTAACTGTCACGTCCCGGGGGGAGGAGGTAGGAGACAGCCAGTCCCTGGGCCTGCCAGGGGCCACCTTCTCTAAGAGGGGGCTCTGTG| |GGCTGGGAGGGCCAGAGGCCTCAGATTCAGCAGTAGTGCTCCCCTTTTCCCCCTGGTCCGTCTCCCCTCCTCCCAACTGCTGGAGCCGGTCGGAGGAGGC
Host Sequence
Chromosome
chr1
Cytoband
p31.1
Reference genome
GRCh37/hg19
Start
78877529/78411844 (Hg38)
End
78877529/78411844 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1L
Nearest miRNA
hsa-mir-101-1/Upstream/1351642; hsa-mir-11399/Downstream/6721950;
Nearest TSS
ENST00000473358/Upstream/107960; ENST00000497923/Downstream/79228;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/365367, chr1-CpG: 70/Downstream/79095
Upstream sequence
cctaagagataagtgctattatctttttttttctttcagataaaactgaggcacagagaaattaagttacaggatcacacaactagccattagcagGATG
Downstream sequence
AGAAAAGCTTTGCCATTCACATCAGTTTACTCTGAAACTAGTTTTAGGAGCTTATTTCAGAAGTCAGAAACTGAACATTGATGGATGATTCTGGATGTTT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate