Basic Information
VIS ID
TVIS42000023
Fusion event
EBV-chr1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
104990
Orient
+
Integrated sequence
AGGCTTCGTGCCAAACCAAAAAGGGCCCCGAGTGCTCCCTACATCCACCCACGTAAAGATCCCCCTGAAAGATGGCCATCAGTAGGCACCCGGGCCCGCG| |TCGAGCCTTCACCCGAATGTGTCTGCGGGCCACGGTGGCCTCTCCACCCATCACATCCCGGTCGAGCCGGCTGGCATCCTCCGAGTCTTTCACGCCTTGC
Host Sequence
Chromosome
chr1
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
111206731/110664109 (Hg38)
End
111206731/110664109 (Hg38)
Orient
+
Location type
Intronic
Target gene
KCNA3 ; LOC107985174
Nearest miRNA
hsa-mir-101-1/Upstream/1065142; hsa-mir-11399/Downstream/1797661;
Nearest TSS
ENST00000473358/Upstream/7069; ENST00000471220/Downstream/10924;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/56545, chr1-CpG: 199/Downstream/9513
Upstream sequence
TCGGATTCCCGGGGGAAGGCCAAGCGGGGCGGACCCCATCTCCGGGAAGTGACGCCATGGGGACGAGCGGCACCAGAGCCGGGGCCAGTCGGAGCGGGGC
Downstream sequence
GCGCGCCGCATGGCGGAAGCGGAAGGGAGTTCTCTGCTCTTGTTGCCGCCGCCGCCACCCCCGCCCAGGATGGCGGAAGTGGAGGCGCCGACGGCGGCCG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate