Basic Information
VIS ID
TVIS42000025
Fusion event
EBV-LOC105369140 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
93588
Orient
+
Integrated sequence
CGTGCGCCTGGCGCGGGTTCTTTAACCAGGTCCTCCTCTGGACTGTGGCCCTCTGCAAGTTTCGCAGATGCATTTACTATAACTACATTCAGGGATCTAT| |AGCCACCATCTCCCAGCTTCTGCACCTCGAGATCAAGGCCCTCTGCAGCTGGATAATATCCCAGGATGGCATGCGCCTCTTTCAACACAGCAGGCCTCTC
Host Sequence
Chromosome
chr1
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
149235108/143740453 (Hg38)
End
149235108/143740453 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1F
Target gene
LOC105369140
Nearest miRNA
hsa-mir-101-1/Upstream/26645725; hsa-mir-1182/Downstream/2110134;
Nearest TSS
ENST00000473358/Upstream/4387; ENST00000424684/Downstream/49557;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/3906, chr1-CpG: 67/Downstream/51724
Upstream sequence
gttgcccaggctggagtgcaatggcatgatctcagctcactgcaacctctgcctcctgggttcaagcaatttttgtgccccagcctcctgagtggctggg
Downstream sequence
attacaggcatgagccactatacccagctaatttctgtatttttagtagagaggggagtttcaccatgttggccacattggtcttgaactcccaacctca
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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