Basic Information
VIS ID
TVIS42000026
Fusion event
EBV-LOC101928372 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
54357
Orient
+
Integrated sequence
ATAGTTGGAGGAGGAGGCAGGTTAGCCTGGCCTGGGTCATTAGTGGCTTCGGGTAGCGTCCGATCCACGTACTCGCTCACGATGGCCGTCAGGGCAGCCT| |CGGCTGCTCGTCTTTTTTCCAGAAGCCCGGCCAGCCCCCGCTCGTACTCCGCGTAGGGGGCCTCCAGATCCGTGTTGACCACCGCTGATTTCATGTCCGG
Host Sequence
Chromosome
chr1
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
160904460/160934670 (Hg38)
End
160904460/160934670 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101928372
Nearest miRNA
hsa-mir-101-1/Upstream/1034591; hsa-mir-1182/Downstream/292516;
Nearest TSS
ENST00000473358/Upstream/290; ENST00000447167/Downstream/16342;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/132507, chr1-CpG: 41/Downstream/86258
Upstream sequence
tagctgggcctggttgtgggtgcctgtagtcccagctactcaggaggctgaggcaggagaatggcttgaacccaggaggcagagcttgcagtgagctgag
Downstream sequence
atcacgccactgcactccagcctgggcgacagagcgagactccatcaaaaaaaataataataaGTCAATGAGTCACTAGGAGTCACTAGGAGGCAAAGGG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate