Basic Information
VIS ID
TVIS42000027
Fusion event
EBV-chr1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
86521
Orient
+
Integrated sequence
GCTGCCTGCCGGGCTGTCAAGGTGAGTATGCCTCTAACTGGGTTCATGGGGGCCATCTAAGGCCCACGTGTGACCCATGTTTCCATTAATTTTAGCAATC| |GCACCTGCAAGCGCTATCAAACCTGATACTCGATAGTGGGTTAGACACACAACACATCTTGTGCTTCGTGATGGCAGCCAGGCAGCGTCTTCAGGACATT
Host Sequence
Chromosome
chr1
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
165593191/165623954 (Hg38)
End
165593191/165623954 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/3281314; hsa-mir-1182/Downstream/283967;
Nearest TSS
ENST00000473358/Upstream/25491; ENST00000460632/Downstream/6907;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/25661, chr1-CpG: 67/Downstream/6534
Nearby gene
MGST3(+6919) ;
Upstream sequence
gaggcatgatcacaccactgcactacagcctgggtgagagagcgagaccctgtatcaaaaactaaataaataaaaaTTAATAAATTTTTAAAAATGGCCA
Downstream sequence
AATCCAGTATTGGTAAAGGGGTGGGGAAATAGGCATGCCCCCTCTAGCTAGGACCACCACTCATTTTCCTCAACATTTCTGACCCTGTAGAGACCTAACC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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