Basic Information
VIS ID
TVIS42000028
Fusion event
EBV-LOC100506023 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
166253
Orient
+
Integrated sequence
GGGGATCCGGATGGGTACGATGGCGGAAACAACTCCCAATATCCATCTGCTTCTGGCTCTTCTGGGAACACCCCCACCCCACCGAACGATGAGGAACGTG| |AATCTAATGAAGAGCCCCCACCGCCTTATGAGGACCCATATTGGGGCAATGGCGACCGTCACTCGGACTATCAACCACTAGGAACCCAAGATCAAAGTCT
Host Sequence
Chromosome
chr1
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
173429057/173459918 (Hg38)
End
173429057/173459918 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1G
Target gene
LOC100506023
Nearest miRNA
hsa-mir-101-1/Upstream/1315274; hsa-mir-1182/Downstream/2508452;
Nearest TSS
ENST00000473358/Upstream/17821; ENST00000460950/Downstream/1444;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/926513, chr1-CpG: 100/Downstream/16921
Upstream sequence
AActtcactactaaaagtgtgattcccagacaagcaggatgcagcattgcctggcagttagtcagaaatgcagactctcaggccccacccagacctgctg
Downstream sequence
aatcagagcctgcactttaagaagatgtgcaggtggttcacattgaaatttgagaagcactgGCCTGTAGTAAACATATTGGGAAACATGGCTGATTCAT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate