Basic Information
VIS ID
TVIS42000031
Fusion event
EBV-chr1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
74901
Orient
+
Integrated sequence
TGCTAAGAAATGAGCAGACGATGGGCTCACTGAGACAGGTTTATTTGCTCGCTGTTCAAGCCAATAGCATCACGGATCACCTGAAGCGCTTTGACGCCGT| |CCGCGTCCCTGAGAGCTGTCGTGGGGTGGTGGAGGCCCAGGTGGCCAAGCTTGAGGCCGTGCGCTCAGTCATCTGGAATACCATGATCTCTCTGGCTGTA
Host Sequence
Chromosome
chr1
Cytoband
q41
Reference genome
GRCh37/hg19
Start
219138496/218965154 (Hg38)
End
219138496/218965154 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/6887469; hsa-mir-1182/Downstream/1152699;
Nearest TSS
ENST00000473358/Upstream/48970; ENST00000496776/Downstream/208690;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/617990, chr1-CpG: 46/Downstream/208613
Upstream sequence
tcgtagaaaagcaagaggatgtctccagagagaggacaacagtattaaatgctgctgagaaaggaaatttctgaaaagggtccattgggttagccatgaa
Downstream sequence
gatgtagtcaggaatcttggtatagggagttgcaatgaggtaatgtaggtggatgctagactgaagtggattgaagaaagaagggggacaagcaatgtag
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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