Basic Information
VIS ID
TVIS42000033
Fusion event
EBV-chr1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
52579
Orient
+
Integrated sequence
GGCGGCGCGCGTCTTCCCCGTCGTTGCTGCCGCGGGTGGTTGAGGGCATGCCCCCCCTCCCGGAGGCTGGACTCCTGACCAGCCTGTAGGTGAGGACCGA| |GTCCGACAGGAGGTCTCCCAAACCCCCATCTCTCGCTAGAGCCGAGACCAGGCCGAGTCCTGCGTAGAACGATGGGGCGCCCAGGAAGGCGGCAGCGTAG
Host Sequence
Chromosome
chr1
Cytoband
q41
Reference genome
GRCh37/hg19
Start
223353553/223180211 (Hg38)
End
223353553/223180211 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/2979592; hsa-mir-1182/Downstream/1076829;
Nearest TSS
ENST00000473358/Upstream/36162; ENST00000446145/Downstream/933;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/36864, chr1-CpG: 183/Downstream/183289
Upstream sequence
agcaatcacacaaacaagctggcataatacccagctaatagcataatgacaggatcaaatccatacatataaatactaaccttgaatgtaaacaggcaaa
Downstream sequence
atgccccatttaaaaggcacagaatggcaagctggataaaaattcaagacccaatggtatgctgtcttcaagagactcatctcacaagcaatgccagcca
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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