Basic Information
VIS ID
TVIS42000034
Fusion event
EBV-chr1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
149150
Orient
-
Integrated sequence
GAGGCTACGATATTCCCGTTAAATGTCTTGTTGATTCTCTCAAAGGTGGGGAGGGAGGAGCTCTCCACAACAATGTTCCCTGGCAGCGTGAGCGCGCAGC| |CCTGCCGTTGGATGTATCTTCTCATGATGGTGCTGATAGAGGGGTCTCCGGCGTAGATGAAAAAGGCCTGGGCCATGCTCTGGCCGGTCACGATCGTTAT
Host Sequence
Chromosome
chr1
Cytoband
q44
Reference genome
GRCh37/hg19
Start
248870199/248706898 (Hg38)
End
248870199/248706898 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA1I
Nearest miRNA
hsa-mir-101-1/Upstream/1504838; hsa-mir-3124/Downstream/119479;
Nearest TSS
ENST00000473358/Upstream/24594; ENST00000515369/Downstream/38381;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/14729, chr1-CpG: 138/Downstream/39685
Nearby gene
LYPD9P(-7788) ;
Upstream sequence
gtgctgtaacttgaatacagtcagttggctttgtttctgtatattttcagaggaccgagtctttgtgtggggtctttatttatggttgaattcttgtctc
Downstream sequence
tggtttcacaagggggcatatttgctaagtatttttggggttgaagttgggctaagaagaggagccacatggttgagtaagagcttatctattggccatt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate