Basic Information
VIS ID
TVIS42000035
Fusion event
EBV-chr10 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
146796
Orient
+
Integrated sequence
GAGGAGAGGGCAACAACGCAAGGCTGTTGTTTTATTTGGGTTACAAGAGCTGCGGCGGTCGATGGGTTCACTGATTACGGTTTCCTAGATTGTACAGATG| |AACTAGAACTGTCACAATCTATGGGGTCGTAGACAGTGTGCTTACCAGACTTCCATGGAAGATGTGAATTTGCTGCTAGCTATATGGGTGGTGCTATGGG
Host Sequence
Chromosome
chr10
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
5885651/5843688 (Hg38)
End
5885651/5843688 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-5699/Upstream/1852429; hsa-mir-107/Downstream/308508;
Nearest TSS
ENST00000439456/Upstream/1556; ENST00000462507/Downstream/44282;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/3016, chr10-CpG: 208/Downstream/45263
Upstream sequence
aacatagtgttggaagttctggccaggacaattaggcaggagaaggaaataaagggtattcaattaggagaagaggaagtcaaattgtccctgtttgcag
Downstream sequence
gttttcttgatgcgtctttgtctgcttttggtactagggtaatactggcctcatagaataattctgaaactattttttgaaataatttgagtagaattgg
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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