Basic Information
VIS ID
TVIS42000036
Fusion event
EBV-LOC105376398 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
130295
Orient
+
Integrated sequence
TCGCTTGTAGGTGCCCATCAGAAATTTAGAAGTCATGGCCCCCGTGTACTGAAACTTGTCCCCGTTGATGGACAGGGCCACATAAGACAAGTGACAGCGC| |AGCTGATAAAAGACATAGCTGTGTGGCCGCGTGTTGGGCAGCATGGTGCCAATATAGTAGAAGAGCTGCTTCTCAAGGGGGGCACTAAGCATGCAGGCAG
Host Sequence
Chromosome
chr10
Cytoband
p14
Reference genome
GRCh37/hg19
Start
8619693/8577730 (Hg38)
End
8619693/8577730 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105376398
Nearest miRNA
hsa-mir-3155a/Upstream/2425453; hsa-mir-107/Downstream/3553030;
Nearest TSS
ENST00000439456/Upstream/176870; ENST00000447297/Downstream/320259;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/63591, chr10-CpG: 72/Downstream/829445
Upstream sequence
agtggttttcccacccagcccactgccactggggtatagaaaggtagataccttgtccaacccaccgccactgggctctcgcccctgtcaccccctaatg
Downstream sequence
aggacatttaagaatctatgattgcagttcaggtgagacttgtggttacgtagacaagggagaggacaatgctgggaagagatggactcatttgacagac
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate