Basic Information
VIS ID
TVIS42000037
Fusion event
EBV-chr10 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
97704
Orient
+
Integrated sequence
CGCCCTCAATCGTATTAAAAGCCGTGTATTCCCCCGCACTAAAGAATAAATCCCCAGTAGACATCATGCGTGCTGTTGGTGTATTTCTGGCCATCTGTCT| |TGTCACCATTTTCGTCCTCCCAACATGGGGCAATTGGGCATACCCATGTTGTCACGTCACTCAGCTCCGCGCTCAACACCTTCTCGCGTTGGAAAACATT
Host Sequence
Chromosome
chr10
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
26186383/25897454 (Hg38)
End
26186383/25897454 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/1621673; hsa-mir-107/Downstream/2391804;
Nearest TSS
ENST00000439456/Upstream/245679; ENST00000376301/Downstream/36256;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/720744, chr10-CpG: 96/Downstream/36538
Nearby gene
LOC105376460(+8479) ;
Upstream sequence
aaatgaaggaaggaagccatcaaaaccactcacgtcagtccaaaagactcaggagccaaaaggaagaggtttcctctggccacgtgggggaaaattggag
Downstream sequence
acaacatgattgtatatctagaaaaccccattgtctcaggccaaaatttccttaagctgataagcaacttcagcaaagtctcaggatacaaaatcaatgt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate