Basic Information
VIS ID
TVIS42000038
Fusion event
EBV-chr10 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
44890
Orient
+
Integrated sequence
ATATGTACACAAGCGTAATTAACGAGTCACAGACCCCCTGTTCCAGATTCTGACCGGCTGCAAGCGCTGCCTTAAAGGCCTGGAAGCTGGGTGGGTAAAT| |CTGACCAAACAGCACGCTCGGATTCGTGATGCTGTGGTTGATGGCACACAGGGGGTCGCAGAACAGGTGCTTGTGGAAGTCTTGCGGGGTGCACATCTGC
Host Sequence
Chromosome
chr10
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
38235959/37947031 (Hg38)
End
38235959/37947031 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/2305779; hsa-mir-107/Downstream/5050532;
Nearest TSS
ENST00000439456/Upstream/88925; ENST00000412789/Downstream/29561;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/88855, chr10-CpG: 56/Downstream/29116
Nearby gene
ZNF25(+2541) ;
Upstream sequence
GGTTACTTGAGCTCTATTTCCATACAAGCCTTTCCCACATAAACGAAGGTGTTTATCCCTCATGTCTGTGGCAATTAAAGAGATGTAGATTTAAGGGTCC
Downstream sequence
aaacctcttgtcttatttgttggctctggatctcttcttgggtctcttgaacctgatgccttccctactgaggttaataggggtttggcgcaataCACTC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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