Basic Information
VIS ID
TVIS42000039
Fusion event
EBV-chr10 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
77541
Orient
-
Integrated sequence
AGTTGAATCACCGCCGTAATCTGTGGTGGGCTCTGTACTTGTCCGGGCTCCATGTCCTGTGGTGTGCTTTCCACCGGTGGTAGAATTGGCCTTTCCACCT| |GTTGAGGTGACCGTGGGAACCGCCGTCTTTTGGCCACTGGGGGCCTGGGGCGACGTTGCATTTTGGGGGGGCGTGCCTTTGGTGACATTAACCTCCCCCG
Host Sequence
Chromosome
chr10
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
42400304/41839903 (Hg38)
End
42400304/41839903 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/6198651; hsa-mir-107/Downstream/1157660;
Nearest TSS
ENST00000439456/Upstream/3386722; ENST00000442306/Downstream/345436;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/2896797, chr10-CpG: 184/Downstream/271130
Upstream sequence
aaccagggaggcgcaggttgcagtgagccgagattgcgccactgcactccagcctgggggacaaagcaagactccgtctcaaaaaaaaaaaaaaaaaaaa
Downstream sequence
catccttaagaacGATGATGGTggccgggcgtggtggctcatgcctgtaatcccagcactttgggaggccaaggcaggcagatcacctgaggtcaggaga
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate