Basic Information
VIS ID
TVIS42000042
Fusion event
EBV-chr10 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
42403
Orient
-
Integrated sequence
ATAACACACACCGAACATGTGGATCTGGATTTTAACTCAGTATTTTTAGAGATATTTCACCGTGGAGACCCAAGCCTTGGGCGCGCGTTGGCCTGGATGG| |CCTGGTGCATGCATGCCTGCAGGACATTGTGTTGTAACCAGTCTACTCCTTACTATGTTGTGGACCTGTCAGTTCGTGGGATGTTAGAAGCCAGCGAAGG
Host Sequence
Chromosome
chr10
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
60139538/58379778 (Hg38)
End
60139538/58379778 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA10C
Nearest miRNA
hsa-mir-1265/Upstream/1075219; hsa-mir-107/Downstream/4993179;
Nearest TSS
ENST00000439456/Upstream/11570; ENST00000395377/Downstream/5244;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/44232, chr10-CpG: 60/Downstream/5185
Nearby gene
UBE2D1(-9025) ; TFAM(+5365) ;
Upstream sequence
aaagttcatgtactgtttcaatcaatccttccaccattcctgaatccaagcaaatactgatctgttttctttccgtattaattttgcctgttctagaatt
Downstream sequence
AGGGAGTGTTGGCTTCAGATCTTATCTCCGCATGTATTTTCTGGGATAACATTGACTGGGTCACTAAATATTTTGGAAGAGATATAGGAAGAGGCAATGG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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