Basic Information
VIS ID
TVIS42000043
Fusion event
EBV-LOC105378335 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
105894
Orient
-
Integrated sequence
GGCCTCGCCCGTCCCACATAATGGATGGGCAGGAAGGGAAAGCCCGGGACATAGGGCTGGAAATCTGAGCCCCCTGGGCAGAGTTCGGGGTCCAGGAGGT| |AGAAGATGGGCTTGGTGCCTCTGTGGTTGGCGTAGCAGGAGGCATAGATACTGCGGAGGAAGGCGTAGAGCCCGCCCCCGGCCATACTCCAAGAGTTGAC
Host Sequence
Chromosome
chr10
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
66355562/64595805 (Hg38)
End
66355562/64595805 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA10C
Target gene
LOC105378335
Nearest miRNA
hsa-mir-1265/Upstream/1222757; hsa-mir-107/Downstream/2807546;
Nearest TSS
ENST00000439456/Upstream/558525; ENST00000634479/Downstream/328713;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/424676, chr10-CpG: 44/Downstream/458072
Upstream sequence
TgcggcgggcccggggcggcgcggTGTCGGCGCGCTACGTGCTGCCCGACGAGGCGGCGCGCGCGCGGCTCCTGCAGGAGGGCGGCGGCGGCGTCGCGGC
Downstream sequence
TATTTTCTGGGATAACATTGACTGGGTCACTAAATATTTTGGAAGAGATATAGGAAGAGGCAATGGCTGATGACCGAATATGAGGATGGTGCAAAGGTTA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate