Basic Information
VIS ID
TVIS42000044
Fusion event
EBV-LOC105378408 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
129712
Orient
-
Integrated sequence
CTAACCTCAGCGCGTACTCCTGTTTCTCAGTAGTCAGGTGACCCAGCTCCTCCATCTTGACCGTGGCCATCAGCATGGCGGCCAAGCGCTCCAGCCCGTA| |GGATTGCATGCCCTTGACAGTGGCCCCATAACATATGCCGATGATGTCTTTCAGGACAGTCAGCTCAAAGAAGCTCTTGGCCAACCAGCGGAGGTCCACG
Host Sequence
Chromosome
chr10
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
88294511/86534754 (Hg38)
End
88294511/86534754 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA10D
Target gene
LOC105378408
Nearest miRNA
hsa-mir-1265/Upstream/269966; hsa-mir-107/Downstream/969127;
Nearest TSS
ENST00000439456/Upstream/12809; ENST00000372071/Downstream/119803;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/12422, chr10-CpG: 37/Downstream/694
Upstream sequence
TAACTGTGTAACACTCAGAGTATTGATTAACTATGGGTATTTTTGACAGCGTGAGAAATTGATGCTTACCATCTGTCTCACCTTTTTGTTTGTTTTTGTA
Downstream sequence
tcatgcaattggaatcatatagtgtacttttttgtgtctagcttctttcactcagcataatatttttgagatttatccacattgttgggtctatcagtag
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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