Basic Information
VIS ID
TVIS42000045
Fusion event
EBV-chr10 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
84340
Orient
-
Integrated sequence
GCTGAAAGCGACGAGGAGGAAGACAAGAGTGGAATGGAATCTCTTAAAAATATACCGCAAACACTGCCGTACAATCCAACAGTATACGGCAGGCCCGCGG| |TGTTTGACCGAAAGTCAGATGCAAAATCAACCAAAAAATGCAGGGCCATAGTAACTGACTTTAGTGTAATCAAGGCCATTGAAGAGGAACACAGAAAGAA
Host Sequence
Chromosome
chr10
Cytoband
q23.33
Reference genome
GRCh37/hg19
Start
94978888/93219131 (Hg38)
End
94978888/93219131 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA10D
Nearest miRNA
hsa-mir-107/Upstream/3626304; hsa-mir-1287/Downstream/2845184;
Nearest TSS
ENST00000439456/Upstream/142798; ENST00000445435/Downstream/104544;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/143632, chr10-CpG: 54/Downstream/277245
Nearby gene
XRCC6P1(-9967) ;
Upstream sequence
GAACTTGACTCCTCCTACGCCCTGTGAAGGCTGCAAGGTGGTTCCGTCCGAGGCGCGGACTCCGCCCCCACGAGCGCCGCCATTTTGTTTGGCTGAGGGG
Downstream sequence
CGTGGTGGTGCTGGACCAGGGCAGCCGCCACTGGCAGAAGCTGCGAGAGGAGAGCGCCGCGCGTGTCGTCCTCACCTCGCTACTCGCTTGCCTACCCGCC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate