Basic Information
VIS ID
TVIS42000049
Fusion event
EBV-chr10 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
92895
Orient
+
Integrated sequence
TGAGGACGTTGCAGTAGTCAGAGACCAGAGAGCCCAGCTGCTTTTTGATTTCAGGAGTTAGCCTCAGAAAGTCTTCCAAGCCATCCTTTTTAGGCCTCAT| |GGCTAGTAGTAACAGAGGAAATGCCCGACCATTAAAATCTTTCCTCCATGAGCTTTACCTGAAACACTATCCCGAAGTGGGGGATGTGGTGCATCTACTG
Host Sequence
Chromosome
chr10
Cytoband
q25.2
Reference genome
GRCh37/hg19
Start
112991628/111231870 (Hg38)
End
112991628/111231870 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Nearest miRNA
hsa-mir-107/Upstream/242857; hsa-mir-202/Downstream/1067742;
Nearest TSS
ENST00000439456/Upstream/154707; ENST00000643850/Downstream/120233;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/152325, chr10-CpG: 35/Downstream/951655
Nearby gene
LOC109614541(+9955) ;
Upstream sequence
TAACTCATGAACAGGAAGAGGGCCCACCAATCCAGAGATTGGAAGGCTACAAGAGCAGCTTAGGCAGAGCATTGAGGCTATAATGGATATTAATGTTAGG
Downstream sequence
AGGGAGTGTTGGCTTCAGATCTTATCTCCGCATGTATTTTCTGGGATAACATTGACTGGGTCACTAAATATTTTGGAAGAGATATAGGAAGAGGCAATGG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate