Basic Information
VIS ID
TVIS42000051
Fusion event
EBV-chr10 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
111503
Orient
+
Integrated sequence
TCTAGCTGCTTGTAGTTGATTTTTGGAAATTGAGTCTTGGTCGCGGTGACCACCCTCTGATAGGTAGAAATTAGCTGTTTGGACTCAAACGTCTCCCTTG| |CGTGGCGCAGGGACTCTAAGGCACCCCGAGCAGATGTAAACTGTGTTTCAAACAGAGCGTGGTCCCTCCCAAATCTGTCACGTGCGCTCACAGCCGCTCT
Host Sequence
Chromosome
chr10
Cytoband
q26.13
Reference genome
GRCh37/hg19
Start
124131313/122371797 (Hg38)
End
124131313/122371797 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA10D ; FRA10F ; FRA10A ; FRA10B
Nearest miRNA
hsa-mir-107/Upstream/2413205; hsa-mir-202/Downstream/45168;
Nearest TSS
ENST00000439456/Upstream/39830; ENST00000463663/Downstream/2899;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/207770, chr10-CpG: 127/Downstream/2682
Nearby gene
PLEKHA1(+2781) ;
Upstream sequence
tgcccaggctggagtgcagtgatgcaatcgcagctcacttcaacctccgcctcctgggttcaagcaattctcctgcctcagcctcacaactaatttttat
Downstream sequence
ATTTTCtttttgagcacctactacatgccagacacaagataagtattttatattcaccaaccttttaaatctcctcaacaaccttgaagggcaaatgtta
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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