Basic Information
VIS ID
TVIS42000054
Fusion event
EBV-chr11 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
167672
Orient
-
Integrated sequence
GCCTAGACAGACAGTGTGGCTAAGGGAGTGTGTGCCAGTTAAGGTGATTAGCTAAGGCATTCCCAGTAAATGGAGGGAGAGTCAGTCAGGCAAGCCTATG| |ACATGGTAATGCCTAGAAGTAAAGAAAGGTTAGTCATAGTAGCTTAGCTGAACTGGGCCGTGGGGGTCGTCATCATCTCCACCGGAACCAGAAGAACCCA
Host Sequence
Chromosome
chr11
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
22415161/22393615 (Hg38)
End
22415161/22393615 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-210/Upstream/2633532; hsa-let-7a-2/Downstream/1025490;
Nearest TSS
ENST00000527297/Upstream/31321; ENST00000531858/Downstream/53761;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/51784, chr11-CpG: 20/Downstream/39139
Upstream sequence
gatgcacctgcatgcctttgtgtcctgaaaagacgttttgccataaaggccctaattgtaagatgtgtaaatgttaagtctccaccccaaagtgaacatg
Downstream sequence
cattgtaggcttcactgggaagattaatatttagtaaatacctgaattaggtgcgagagctggccatgtggctgtctgaggcaaaagcattctaagcata
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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