Basic Information
VIS ID
TVIS42000056
Fusion event
EBV-LPXN integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
Virus Sequence
Virus name
EBV
Reference genome
Start
83640
Orient
+
Integrated sequence
AAACCTGAACATCGAAGAATTTATATGGATGTGCATGACCGTGCGTCACAGATGTCAGGCCATCAGAAAAAAACCATTACCAATTGTTAAGCAGAGGCGT| |TGGAAGCTCCTGTCATCTTGCAGATCCTGGCGTATGGGTTACCGCACGCATAACCTCAAAGTAAACAGTTTTGAGTCAGGGGGGGACAATGTCCACCCGG
Host Sequence
Chromosome
chr11
Cytoband
q12.1
Reference genome
End
58310167/58542694 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-129-2/Upstream/901408; hsa-let-7a-2/Downstream/1052383;
Upstream sequence
AGCAATTGATTTGCTCTCCTGCTCTTGAACTCCTGTTTTCATTTAGGTACCTGGTAGAATGCTGGGTAATGAGAGAGTCAAACCTTACTTTAACAGAAGA
Downstream sequence
AAAAGATCATGTTCTGAAGCTGTGTGACATAAACAGCAAAGATAGGTGCTTTTCTCCTTTTCCACACTGACTGATTTCCGTTTCAAAAAAGAATATCAAA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate