Basic Information
VIS ID
TVIS42000057
Fusion event
EBV-GLYATL2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
81942
Orient
+
Integrated sequence
CTGGCTCGTTTGCGTGCTGAGGCACAGGTCAAACAGGCTAGTGTTGAGGTGCAGCCCCCCCAGTTGACCCAAGTATCCCCTCAGCAACCAATGGAGGGGC| |CGTTGGTACCAGAGCAGCAGATGTTCCCTGGTGCCCCCTTTAGCCAGGTTGCTGATGTGGTCCGGGCACCTGGGGTACCGGCGATGCAGCCACAGTACTT
Host Sequence
Chromosome
chr11
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
58615188/58847715 (Hg38)
End
58615188/58847715 (Hg38)
Orient
-
Location type
Intronic
Target gene
GLYATL2
Nearest miRNA
hsa-mir-129-2/Upstream/1206429; hsa-let-7a-2/Downstream/747362;
Nearest TSS
ENST00000527297/Upstream/2931; ENST00000524629/Downstream/56500;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/267867, chr11-CpG: 40/Downstream/57663
Upstream sequence
ggagcccgcaagacgcgccccgcccgcccaccaggctccctctccgcccccgccccgagccccgcccgcccaccaggcccaccccgccccgcggaggggc
Downstream sequence
cgcagcccggccATTGGCCAGCCGGGGCGCCGGCCACCTCACGCCCCACGCCCCACGCCCTCCTCTTCTGCCTCAGCGACCAGCTCTACCGAAGGCAGCC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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