VISDB Viral Integration Site DataBase

VIS ID

TVIS42000058

Fusion event

EBV-ANKRD42 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

86069

Orient

+

Integrated sequence

GTAACAAGAACTGGGATGAACCCTGGGGCAACAGACTGCGGGGAGGAGGGGGGCAGTGATAAGTCATGACAATTTTAGATGAGGTAGAAATTTTGCATAT| |TTTCAGACCCACCATGGAATCATTTGAAGGACAGGGGGACTCTAGACAGTCACCCGACAATGAGCGGGGAGATAATGTACAGACTACCGGCGAGCATGAT

Chromosome

chr11

Cytoband

q14.1

Reference genome

Start

End

82939295/83228253 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-369-5p ; hsa-mir-6806-5p ; hsa-mir-3119 ; hsa-mir-885-3p ; hsa-mir-3184-5p ; hsa-mir-423-5p ; hsa-mir-6813-5p ; hsa-mir-6085 ; hsa-mir-449c-5p ; hsa-mir-34b-5p ; hsa-mir-2682-5p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-6719-3p ; hsa-mir-1261 ; hsa-mir-4276 ; hsa-mir-5190 ; hsa-mir-4790-3p ; hsa-mir-5094 ; hsa-mir-380-3p ; hsa-mir-3133 ; hsa-mir-186-5p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-3683 ; hsa-mir-1273c ; hsa-mir-6811-3p ; hsa-mir-767-5p ; hsa-mir-873-3p ; hsa-mir-4793-3p ; hsa-mir-3130-3p ; hsa-mir-766-3p ; hsa-mir-1914-5p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-508-5p ; hsa-mir-4696 ; hsa-mir-138-2-3p ; hsa-mir-6501-3p ; hsa-mir-451b ; hsa-mir-4432

Nearest miRNA

hsa-mir-10392/Upstream/1337417; hsa-let-7a-2/Downstream/3050080;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/33635, chr11-CpG: 68/Downstream/57346

Upstream sequence

gaaagaggggtcagtaggtacagccacgagagttcaaggaaccaaaaggaggcccccatggctgaagcacggaggacctgggagaggccgagggggatgg

Downstream sequence

tgctagatgttgggccaaaggtaggtcccacagggccttgcagggccactggaagcctatgaattttcctaaggacatatggaaagtcattagaggattt