Basic Information
VIS ID
TVIS42000060
Fusion event
EBV-chr12 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
154269
Orient
+
Integrated sequence
CCGTCTCGGCGATGGAGAGGCAGGGAAAGAGGCCGTTGGCCACCCCGGTGAAGCCGTAGACGGCGTTGCACGTGCACTTGATGGCCAGCTGCTGCTTGTC| |GAGGATGGTCCTTTGGCGCGGATCCTCGCAGGCCGCCAGCAGCTTCTTGATGGCCTTGCGCTTGGCCAGCCAGGAGGTCAACAGACTAGCCAAGAAGGAC
Host Sequence
Chromosome
chr12
Cytoband
p13.31
Reference genome
GRCh37/hg19
Start
6411923/6302757 (Hg38)
End
6411923/6302757 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3649/Upstream/4642377; hsa-let-7i/Downstream/660942;
Nearest TSS
ENST00000382841/Upstream/70571; ENST00000538208/Downstream/7679;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/11152, chr12-CpG: 77/Downstream/7547
Nearby gene
LOC105369624(-5268) ; PLEKHG6(+7679) ;
Upstream sequence
aacaaacaaacaaacaaacatgaaaaggcaaacaaacaTGAAAAGGCAAATGATAGAACTGGCCAGTTCCATTTCTAATGGCCTGAGTGGACTCATTCTA
Downstream sequence
ATGACATTATCTCATTGGAATTCCCTGGACTCTGGATTTATAATAAGATAGTCCAAAATGCTCTTGTCTGTGATGGAAAAATACAACACAATTACTGTAA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate