Basic Information
VIS ID
TVIS42000063
Fusion event
EBV-chr12 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
164158
Orient
+
Integrated sequence
GAGGTAGCGCGTAGGAGCCCGCAGTTGGGGTCGGGCCTCCTGTGCAGAGCCTTGACATTGATGCTGAAGCCCGGCTCCACGGTGATGCCGCAAAGGAGCG| |GCACCGTCAGGCACCTGTGGCCCGCGTAGCCGGTCCCCAGTGTGGCCACCTCCCTAAGAGGGTAGGTGGCCAGGGGGTAAAAGTAGATGTAGCCGCACGG
Host Sequence
Chromosome
chr12
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
17245345/17092411 (Hg38)
End
17245345/17092411 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1244-3/Upstream/4176493; hsa-let-7i/Downstream/580888;
Nearest TSS
ENST00000382841/Upstream/398611; ENST00000539105/Downstream/496846;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/1180811, chr12-CpG: 131/Downstream/2036980
Upstream sequence
TTCACTATTACAGAATCCTGCAATATGTCCTTGGAAGGTCTCTGCTGAAAATTTCAATGCCTCCTGCAAAAAGAAGGAAGAGAAAGAAAAGGAGAAAACA
Downstream sequence
CCATCAAATTAAATATTAGGATCCTATTGCTAGCTTGATGGTGAATAAGCATATTTTCCAAATTCCTATGAATCTCCTGCTGCTTTGAATTGTTCCTAGT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate