Basic Information
VIS ID
TVIS42000067
Fusion event
EBV-chr12 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
157320
Orient
+
Integrated sequence
CTCGGAGCCAGGGACCCTCATGCTCTTGCGCAGGGTGACGGTGGCCTGGTTAACGGGCACGCACTGGGAGACTGAGATGACATCCCCCAGGCGCTTGGCC| |GCCACCGCCTTACCGTAGATGCTGGACATGACGGTGGTTGGATTAATCTTGGTTAGTTCTCTCAGCACCATGTTCTGCCTCTTCTGCTCCAGGCACCAGG
Host Sequence
Chromosome
chr12
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
60923341/60529560 (Hg38)
End
60923341/60529560 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1228/Upstream/2704868; hsa-let-7i/Downstream/1730799;
Nearest TSS
ENST00000382841/Upstream/436696; ENST00000546718/Downstream/1297673;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/932834, chr12-CpG: 117/Downstream/1661427
Upstream sequence
CAGAATACTAGCACTGAAACCCACATCCTGGTAGCCCATTTCCATATTTCCTCTAAAGACCCAGAGACAAACTGTCATAAGATGATAGGACAGGCACAGA
Downstream sequence
CAGGATAAAGCCTTTCAATATAAAATGTTAGTGAGGTGGAACCAGAGTTGATTAACAGCTGGACTGGGAAAGCTCGGTCTTTTTATCTTGGGACTTCTGA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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