Basic Information
VIS ID
TVIS42000068
Fusion event
EBV-chr12 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
84119
Orient
+
Integrated sequence
ACACTCATATACGCGAATGGTTCCGCCAGTGCACCGGGAGACCCAAAGCAGCCAAGCCATGGTTAAGAGCGCATCCTGTCGCCATTCCTTATGATGATCC| |GTTAACAAACGAGGAGATTGATCTGGCCTATGCCCGCGGGCAGGCCATGAATATTGAGGCTCCTAGACTGCCAGATGATCCTATAATTGTTGAGGATGAC
Host Sequence
Chromosome
chr12
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
90740795/90347018 (Hg38)
End
90740795/90347018 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA12B
Nearest miRNA
hsa-let-7i/Upstream/3601869; hsa-mir-1178/Downstream/4214771;
Nearest TSS
ENST00000382841/Upstream/53695; ENST00000549669/Downstream/275804;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/636730, chr12-CpG: 30/Downstream/607009
Upstream sequence
aaataactttcccaagatcacagagctggtaaatggTTGTATCCATTCTCCAACACCACATtagtgctgcataacaagcacccaaaactactaacaggct
Downstream sequence
aataataaaaatgtacttttgcacatgaatcaaccaggttggctaagtcattctgctgatttggtccaagttagtcagatctcagctgggctccctcgta
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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