Basic Information
VIS ID
TVIS42000069
Fusion event
EBV-chr12 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
145934
Orient
+
Integrated sequence
AGCTCAACAGCCCCACCTGGGTAAAATGTATGTTCTAAAGAGTTACCCAATTATAACAAAACTGTTGTAGGGTAACGAAGACCTGATGGAAGTGGTATTG| |TTGCCGTTGAAAGACGGGTGTCCTGGCTCAAGTTCGCACTTCCTATACAGTGTTAAAGCCTTGTATCGGAAGTTTGGGCTTCGTCCCAGTGTACTCGATA
Host Sequence
Chromosome
chr12
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
105661566/105267788 (Hg38)
End
105661566/105267788 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7i/Upstream/676072; hsa-mir-1178/Downstream/3368022;
Nearest TSS
ENST00000382841/Upstream/31550; ENST00000546866/Downstream/59229;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/31467, chr12-CpG: 83/Downstream/62706
Upstream sequence
caatatccctgatgaacatcgatgcaaaaattctctataaaatactggcacaccaaatccagcagcacatcaaaaagcttatccaccatgatcaagttgg
Downstream sequence
cctcatccctgggatgcaaggctggtccaacatacacaaatcgataaacgtaatccatcatagaaacagaaccaaagacaaaaaccacatgattatctca
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate