Basic Information
VIS ID
TVIS42000073
Fusion event
EBV-chr13 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
83858
Orient
+
Integrated sequence
TAGGATGTGATGAGGGCACGCGGCATGCAACAACGTACAGTGCTGGCATTGTACAGATACCACGAATATCAGACCAAAACCAAAAGATCGAAACAGCCTT| |CCTGATGGCACGTCGTGCTAGGTCACTTTCGGCAGAAAGATATACTTTGTTCTTTGATTTAGTATCCTCCGGAAACACCCTGTATGCTATATGGATTGGG
Host Sequence
Chromosome
chr13
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
35036439/34462302 (Hg38)
End
35036439/34462302 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA13A
Target gene
LINC00457 ; LINC02343
Nearest miRNA
hsa-mir-2276/Upstream/10299798; hsa-mir-1267/Downstream/5201732;
Nearest TSS
ENST00000623511/Upstream/114259; ENST00000497540/Downstream/72048;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/643946, chr13-CpG: 79/Downstream/479932
Upstream sequence
ACAAGCTCAGAATCAAACACAATAAAGGTATTTCTTCGAGTCACAATCATGACTCAGCAGCACAGAAAGACTTGCTCTCTGCAGGTCTCTATGTTTGACT
Downstream sequence
aagtgctgggattacaggcgtgagccactgtgtccagccAAGAGTATTTTGTTTTCATTAAATTTAGGGTATGCATCCTATCCTATGTtatcagtcagga
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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