Basic Information
VIS ID
TVIS42000074
Fusion event
EBV-MIR548F5 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
93990
Orient
+
Integrated sequence
AAAGGCCGGCTGACATGGATTACTGGTCTTTTATGAGCCATTGGCATGGGCGGGACAATCGCAATATAAAACCCTGACCATCACATGGGGCATTAGGCGA| |CTCTGCATCAGCATCGCTTAAGTATGAGTGGGCAGCAGAGAGGCTCGGTTATTTTGGTTCCTGAACATCTGGCTGGGGCATTAACTAAGCTTATGAGCGA
Host Sequence
Chromosome
chr13
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
36494108/35919971 (Hg38)
End
36494108/35919971 (Hg38)
Orient
+
Location type
Intronic
Target gene
MIR548F5
Nearest miRNA
hsa-mir-2276/Upstream/11757467; hsa-mir-1267/Downstream/3744063;
Nearest TSS
ENST00000623511/Upstream/64110; ENST00000379848/Downstream/211335;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/440989, chr13-CpG: 75/Downstream/210932
Upstream sequence
ATTGCCTAAAAGTTATTATTGCTTTTATTTCCTATGTCATACCAGAAGAAAATTTTTCTAAGTAGAGTGGCTTGATTTTGCTGGATAATTATTTGGATCC
Downstream sequence
CACTAATATGTATGCTTTAAATGTACTTCAGAATACACAATGTCTATTCATATACTTCGTTTCATCTCATCAATAATTAGGAGGACAGTCACTGTTGGAC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate