VISDB Viral Integration Site DataBase

VIS ID

TVIS42000076

Fusion event

EBV-RUBCNL integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

51861

Orient

+

Integrated sequence

GCCCTGGCCTCGGTGAGAAGCTCGCGTAGCCACACGGCCTGGCGTGCAAAGATGGACATCTCTGGCTCGAAAGACTCGGAGTAGCCGTCCAGGTCCTGCA| |GAAAATTCAGCGAGATGGTCTCCACCAGGGACCGGAAGGGCTCAGAGTGCCCGTCGCAGTAGAGGAGGGGAGCAACGACCCTGACCTGTCCCAGGGTCTT

Chromosome

chr13

Cytoband

q14.13

Reference genome

Start

End

46921121/46346986 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30c-5p ; hsa-mir-30b-5p ; hsa-mir-30a-5p ; hsa-mir-1257 ; hsa-mir-1296-5p ; hsa-mir-1915-3p ; hsa-mir-2909 ; hsa-mir-4253 ; hsa-mir-4436b-3p ; hsa-mir-4632-5p ; hsa-mir-4726-3p ; hsa-mir-4761-3p ; hsa-mir-6716-5p ; hsa-mir-6735-5p ; hsa-mir-6764-5p ; hsa-mir-6840-3p ; hsa-mir-6862-5p ; hsa-mir-6879-5p ; hsa-mir-7113-5p ; hsa-mir-7843-5p

Nearest miRNA

hsa-mir-2276/Upstream/2150786; hsa-mir-1267/Downstream/3649429;

Nearest TSS

Nearest CpG islands

None/Target, chr13-CpG: 551/Upstream/294102, chr13-CpG: 93/Downstream/39563

Upstream sequence

TTCAGAATGTGTTAGGCAATGGAAATGGTGAGGAGGGAGTGTTCAGAAGGAAGGGAGAAAATGATAGAACAATTATCATAAGCAGCAATTCTTGAATACC

Downstream sequence

TTACTATTGGACTAATCATTATTGAAATTATCAAATAGTCTAAAGCTTGTCATCCCTCGGTGCCTGAGTCACCTCTGGATGATCCAGGGTGGGCTGCAGA