Basic Information
VIS ID
TVIS42000077
Fusion event
EBV-LINC00444 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
48367
Orient
-
Integrated sequence
CCCGGGAGATTCGCGACAGAGTTACACCAGCGACTGCACCTTCGTTCGTGGCTGATCATGCCTCGGCTCTATTGGCCTCCCTCCAGAAGAAGGCCTCCGA| |CACCCCCTGTGGGAATCCCATTCAGTGGATGTGGTACCGCCTGTTGGTAAACTCGTGCCTGAGGAGTGCCCACTGTCTTCTGCCTATACCTGCCGTCTCT
Host Sequence
Chromosome
chr13
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
48483591/47909456 (Hg38)
End
48483591/47909456 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC00444
Nearest miRNA
hsa-mir-2276/Upstream/3713256; hsa-mir-1267/Downstream/2086959;
Nearest TSS
ENST00000623511/Upstream/2099; ENST00000423869/Downstream/23166;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/1112107, chr13-CpG: 53/Downstream/91489
Upstream sequence
CATGCCTAAGTCTTTACTGGTTGTATAGTATTCTATTCTACGGACATGGTATTAATGTAAGTACTGCCCTATTACGAACACCTAGATTTTTAAAATAAtt
Downstream sequence
tcaacttttattttagatttgggggtatgtgtgcaggtttgttacacaggtatatcgcaggacactgaggtttggagtatcaatgatcccatcacccagg
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate