Basic Information
VIS ID
TVIS42000079
Fusion event
EBV-RNF219-AS1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
5695
Orient
-
Integrated sequence
CCCCGCCTTTGGGCACCCCACGGGGTGCTCCCCCTGGACACTTATGTTTCAAGCAGCTCACCTATGGTCACTCAGGCACGGTCGCCCCTCCGAGTGACCA| |GTCACCTTCCAGACTATGCATACACTGAATTTAGCCTGATATTGTCCCCCTAGCCCCGGGCCCAGCCCTCCTCAGAAAACTCTGCATGGAGAAGCTGGAC
Host Sequence
Chromosome
chr13
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
78674429/78100294 (Hg38)
End
78674429/78100294 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA13E
Target gene
RNF219-AS1
Nearest miRNA
hsa-mir-1297/Upstream/402178; hsa-mir-1267/Downstream/9518371;
Nearest TSS
ENST00000623511/Upstream/45139; ENST00000607269/Downstream/177220;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/181047, chr13-CpG: 91/Downstream/495685
Upstream sequence
ctcagcctcacgaatagagtagctgggattacaggcgcctgccactatgcccagataagttttgtagttttagtagagacagggtttctctatgttggcc
Downstream sequence
aggctggtctcaaactcctgacctcaggtgataggcccgcctcagcctcgcaaagtgctgggattacaggcatgagccactgcgcctggccTCACCACTC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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