Basic Information
VIS ID
TVIS42000080
Fusion event
EBV-chr13 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
55294
Orient
+
Integrated sequence
TTAGGAAGCGTTTCTTGAGCTTCCCTGGGATGAGCGTTTGGGAGAGCTGATTCTGCAGCCCAGAGAGTAGTCTCAGGGCATCCTCTGGAGCCTGACCTGT| |GATCGTCGCATCATAGACCGCCAGTAGACCTGGGAGCAGATTCACCGCCGCGGCCGTCTCCTTTAAGGTGCTGTGAGTAGCAAAATTCTGCAAGGCCACT
Host Sequence
Chromosome
chr13
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
98583264/97931010 (Hg38)
End
98583264/97931010 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA13D
Nearest miRNA
hsa-mir-1297/Upstream/1503718; hsa-mir-1267/Downstream/277514;
Nearest TSS
ENST00000623511/Upstream/253047; ENST00000604129/Downstream/8346;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/496145, chr13-CpG: 133/Downstream/44795
Upstream sequence
CTGGTCGTAAACTTGAACTCACATCTAAACATTCCATGCCAGCCTCTGCAGTCAGGCAGACGTCCTGATCTACCTCTCTGCCTAGAGGTGTAGGtccaga
Downstream sequence
gtggatctaactgagttccttgctctgccacttgctggctatgtgatcttgaaaaacttgcttaattttttctgagtctttgttgcctcatctgtatgga
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate