Basic Information
VIS ID
TVIS42000081
Fusion event
EBV-LOC107984626 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
42605
Orient
+
Integrated sequence
TGGATGGTTGGATTCATCAACAGGGCGGCTGGTCTACATTAATTGAAGACAACATTCCTGGATCCAGAAGGTTTAGCTGGACTTTGTTTCTTGCTGGACT| |GACTTTGAGTCTGTTAGTTATATGTAGTTATTTATTTATCTCCAGAGGAAGACACTAATCTATACATTTTCTCAGCACTTTATATGAATCAGGGTCATTG
Host Sequence
Chromosome
chr13
Cytoband
q33.2
Reference genome
GRCh37/hg19
Start
107021677/106369329 (Hg38)
End
107021677/106369329 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107984626
Nearest miRNA
hsa-mir-1297/Upstream/4323325; hsa-mir-1267/Downstream/1161842;
Nearest TSS
ENST00000623511/Upstream/678900; ENST00000643760/Downstream/5148;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/3522916, chr13-CpG: 29/Downstream/123731
Upstream sequence
tgtttgtgaggtttatctgtgcatcttctttctgtatagcattgtactgtataaatatatcacaactgatttatccattctactgttggtggaaatttgg
Downstream sequence
ggtgctacgtgtttgggattattataaattgctgctgtgtgccttatttcacatgtgttttggtgagtacgtatacaaatttctattgtgtatacctaag
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate