Basic Information
VIS ID
TVIS42000082
Fusion event
EBV-chr14 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
58619
Orient
+
Integrated sequence
AAAGGCCTCGGGTAGAAAATAGAGATGCACGCAAGTGTACTGGGCCCCTGGTGCCCCCACGTACTGCAGGATGTCGTGCGCATAGGTGCTGACTCTGACA| |TGGGCGGGGGTGCCCGGGGCCGCATCCTTCTGGCAGTGGGGGTCAAACAAGTAGAAGGAGCCATCTGTCTCGATGATGATGGCCCCCGCGTAGATGTCGC
Host Sequence
Chromosome
chr14
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
20457191/19989032 (Hg38)
End
20457191/19989032 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1185-1/Downstream/1034282;
Nearest TSS
ENST00000550708/Upstream/13588; ENST00000315683/Downstream/26161;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/300780, chr14-CpG: 22/Downstream/424378
Upstream sequence
CAGGCCTCTCTCTGAAGGGGCTCTCAGCGGGCAGGAAGCAAGGGCGCCTGCTGAAGAGCCCTGGCCCAGGGAGCACGTGGGCACCACACAGCTcttgctc
Downstream sequence
gaagggtaaaactccgtctcaaaaaaaaaaaaaatagaagatagaaagatcacaaataaataacctttccttgcctctaaagggactagaaaaatatgag
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate