Basic Information
VIS ID
TVIS42000084
Fusion event
EBV-LOC105370420 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
97329
Orient
+
Integrated sequence
AACTGCCCTTGCTATTCCACAATGTCGTCTTACACCATTGAGTCGTCTCCCCTTTGGAATGGCCCCTGGACCCGGCCCACAACCTGGCCCGCTAAGGGAG| |TCCATTGTCTGTTATTTCATGGTCTTTTTACAAACTCATATATTTGCTGAGGTTTTGAAGGATGCGATTAAGGACCTTGTTATGACAAAGCCCGCTCCTA
Host Sequence
Chromosome
chr14
Cytoband
q12
Reference genome
GRCh37/hg19
Start
27676283/27207077 (Hg38)
End
27676283/27207077 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105370420
Nearest miRNA
hsa-mir-208a/Upstream/298352; hsa-mir-1185-1/Downstream/426128;
Nearest TSS
ENST00000550708/Upstream/333914; ENST00000555350/Downstream/405511;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/1001805, chr14-CpG: 203/Downstream/1558606
Upstream sequence
GGAAGGGGTTCTCTGGGCGTGCACAAGGAGTCCAAGGCAGTCCCTCTGGACGGGATGAGAGACACTCTCCAGCTCAGGGGGATAATGTGGGGTGTCCGAG
Downstream sequence
tgccatgattctgaggcctccctccccagccatgtggaaccgtaagtccaattaaacctctttttgttcccagtttctggtatgtctttatcagcagtgt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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