Basic Information
VIS ID
TVIS42000085
Fusion event
EBV-LOC102724945 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
64804
Orient
+
Integrated sequence
CCGAGTGGGACGTGACCCAGGCCCTCTATAGGCACCTGGGGCGCTACCTCTTTCAGCGAGCCGGGGTGGGTGTAGGGGTGACGGGGGCTGGCCAGGATGG| |GAAACACATCAGCCTCCTGATGAGGATGATCAACAGCCACGTGGAGTACCACAACTATGGCTGCAAGAGGCCGGTCAGTGTGGCGGCCTACATGGAGCCC
Host Sequence
Chromosome
chr14
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
34607423/34138217 (Hg38)
End
34607423/34138217 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC102724945
Nearest miRNA
hsa-mir-208a/Upstream/3123475; hsa-mir-1185-1/Downstream/2814092;
Nearest TSS
ENST00000550708/Upstream/8173; ENST00000554608/Downstream/31549;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/77464, chr14-CpG: 34/Downstream/324196
Upstream sequence
caagtctcatgatagctgatgggtttatcaggggtttctccttttgcttctttctcatttttctcttgccactgccaggtaagaagtgccttttgcctcc
Downstream sequence
GAATTGTACACCTGAACACAGAGTCAGGAAGCACTTGTCATTGTGGCCACTTTAGCCACTCGCCCACATACATCACCGTAATAACCACTCAGTGGGCTTG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate