Basic Information
VIS ID
TVIS42000086
Fusion event
EBV-chr14 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
109303
Orient
+
Integrated sequence
AGTCACCCTCCGAGGGCAACCGCCCATCCGGGACGTACTCCACGGTAGGACGAGCTATAGAATTGATAAATCTGATAAATGACCTCTTGCATGGCCTCTT| |GTAAAGCGCAGTGTAGGATGGGTAGATGGGGTCAAATTCTGACTTGGAAAAGAGGTACTTGAAGCGGCACTTAATCTCATAAATGCAGCTCCGGTCGGTG
Host Sequence
Chromosome
chr14
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
40316249/39847045 (Hg38)
End
40316249/39847045 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-208a/Upstream/2894654; hsa-mir-1185-1/Downstream/7913950;
Nearest TSS
ENST00000550708/Upstream/372110; ENST00000553464/Downstream/539207;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/414043, chr14-CpG: 47/Downstream/1759610
Upstream sequence
CATTTTCAGTGCCTTGTTTGACAGGGTTAGGGAGGTGGGATGGGATGGCCATCCTGACCACAGGGGCATGGGAAGGAGAGTGGTAAGGAGGAAGAAAACA
Downstream sequence
AATACAATCTCTTAAATGTGAGCAAACTAGAATGGTTCTGTCTTTTCTGTGTTCTCTAGCACTCCCAAAGTTTCCTTCCTTAAAGGGAAGTCTTGTTACA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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