Basic Information
VIS ID
TVIS42000087
Fusion event
EBV-LINC01588 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
127564
Orient
+
Integrated sequence
ACCTGCCATCGGGACAGATTGTCTTCCACACCATCCACAGCCCCACTCTTGCCTCGGCGCTGGGACTGCCTGGGGAAAATGTACCCATCCCGGCCCTCTT| |CCGTGCCTCGGGCCTCAACGTCCGTGAGAGCCTACCCATGACCAACATGAGGGCACCGATCATCTCGCTGGCTCGCCTCATCCTGGCCCCCAACCCCTAT
Host Sequence
Chromosome
chr14
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
50466925/50000207 (Hg38)
End
50466925/50000207 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC01588
Nearest miRNA
hsa-mir-208a/Upstream/33696; hsa-mir-1185-1/Downstream/299648;
Nearest TSS
ENST00000550708/Upstream/7073; ENST00000426751/Downstream/6312;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/106128, chr14-CpG: 43/Downstream/3090
Upstream sequence
ggagaaCTTCTTCCCCCAATGTAATGTAGTCAAGATGTACAGCTTTTATAGGTGATTGGAGTCCTCCATGACCTTACATAGGAACGTACAAGTACGTACT
Downstream sequence
ATGGAGAGAAGCGAGGGGGCAGGGGTGGCCAGAGAGACGGCTGGAGTGGAGGCGGGGGCACCAGCGTGGGGTGAAGGCAGAGGCACCACGGGAATGTAAA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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