VISDB Viral Integration Site DataBase

VIS ID

TVIS42000089

Fusion event

EBV-RGS6 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

101283

Orient

+

Integrated sequence

TTGTTTACCTGGGTCTCGTGGCTAAAGGAGGACTGAAAGGCGTCTGTCTGGGTGGGAGAGCCCACGCAGACGATGCAGGGAATGCGGCCCCGGCGGTAGA| |GTGGGGTACGCAGCCAGGCGTTGAAGAACCAGTAGCAAAAGACCACGGCTGTTAGAATGTGCACGGAAAGCGTTCCAGCTTCGTCCACCACGATCACATT

Chromosome

chr14

Cytoband

q24.2

Reference genome

Start

End

72932628/72465920 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-6763-5p ; hsa-mir-3150a-3p ; hsa-mir-6727-5p ; hsa-mir-185-3p ; hsa-mir-6825-5p ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-3175 ; hsa-mir-762 ; hsa-mir-4498 ; hsa-mir-5001-5p ; hsa-mir-4492 ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-4731-5p ; hsa-mir-4480 ; hsa-mir-8089 ; hsa-mir-4700-5p ; hsa-mir-4667-5p ; hsa-mir-6775-5p ; hsa-mir-4508 ; hsa-mir-5090 ; hsa-mir-3691-3p ; hsa-mir-6838-3p ; hsa-mir-6895-5p ; hsa-mir-5571-3p ; hsa-mir-3162-5p ; hsa-mir-7106-5p ; hsa-mir-1289 ; hsa-mir-765 ; hsa-mir-135a-3p ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-6760-5p ; hsa-mir-4747-3p ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-642a-5p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-938 ; hsa-mir-1233-3p ; hsa-mir-3182 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-3192-5p ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-877-3p ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-501-5p ; hsa-mir-129-2-3p ; hsa-mir-129-1-3p ; hsa-mir-500a-5p ; hsa-mir-629-3p ; hsa-mir-874-3p ; hsa-mir-3157-3p ; hsa-mir-4279 ; hsa-mir-6794-3p ; hsa-mir-513a-5p ; hsa-mir-4290 ; hsa-mir-130b-5p ; hsa-mir-205-5p ; hsa-mir-4639-3p ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-128-3p ; hsa-mir-216a-3p ; hsa-mir-3681-3p

Nearest miRNA

hsa-mir-208a/Upstream/5023990; hsa-mir-1185-1/Downstream/50900;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/533083, chr14-CpG: 165/Downstream/426161

Upstream sequence

TACTCTGGATGGTGCAGAGGTTCCTCTTGGGACTGGGATTTCATCTGGTGTGAATGACACTTGTCTACTATATAATGAGTACATTGTCTATGATATTGCT

Downstream sequence

GTCCCTTTCAGACAGTGGAAGGGAAGTATCTTCTATTTCTCCTCCCTTGTTCTCAGCTCCTCTGACCATCACAATAAGATGGTGTTTTtacataaataac